Variant report

Variant	rs10980435
Chromosome Location	chr9:99835058-99835059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10119016	1.00[AMR][1000 genomes]
rs10123351	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980403	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980421	0.92[AFR][1000 genomes]
rs10980430	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980433	0.92[AFR][1000 genomes]
rs10980463	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12338332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340206	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28484691	1.00[AMR][1000 genomes]
rs28513814	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28528697	1.00[AMR][1000 genomes]
rs28803929	1.00[AMR][1000 genomes]
rs56190907	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73547546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73547563	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99833400-99835200	Enhancers	Fetal Intestine Large	intestine
2	chr9:99834200-99835200	Enhancers	Fetal Intestine Small	intestine
3	chr9:99834400-99835200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:99834400-99835200	Enhancers	Placenta	Placenta
5	chr9:99834400-99835200	Enhancers	NHEK	skin
6	chr9:99834400-99835400	Enhancers	Fetal Heart	heart
7	chr9:99834400-99835400	Bivalent Enhancer	Hela-S3	cervix
8	chr9:99834400-99835600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:99834600-99835200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr9:99834600-99835200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:99834600-99835400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:99834600-99835400	Enhancers	H9 Cell Line	embryonic stem cell
13	chr9:99835000-99835400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr9:99835000-99836800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr9:99835000-99837200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr9:99835000-99837200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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