Variant report

Variant	rs12343472
Chromosome Location	chr9:99833505-99833506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10119016	1.00[AMR][1000 genomes]
rs10123351	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980403	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980421	0.92[AFR][1000 genomes]
rs10980430	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980433	0.92[AFR][1000 genomes]
rs10980435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980463	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12338332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340206	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28484691	1.00[AMR][1000 genomes]
rs28513814	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28528697	1.00[AMR][1000 genomes]
rs28803929	1.00[AMR][1000 genomes]
rs56190907	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73547546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73547563	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99816200-99834600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:99829200-99834400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:99833400-99835000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:99833400-99835200	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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