Variant report

Variant	rs10119016
Chromosome Location	chr9:99849281-99849282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10122044	0.92[ASN][1000 genomes]
rs10123351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10980403	1.00[AMR][1000 genomes]
rs10980430	1.00[AMR][1000 genomes]
rs10980435	1.00[AMR][1000 genomes]
rs10980463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10980464	1.00[AMR][1000 genomes]
rs10980538	0.86[ASN][1000 genomes]
rs12338332	1.00[AMR][1000 genomes]
rs12340206	1.00[AMR][1000 genomes]
rs12343472	1.00[AMR][1000 genomes]
rs2769139	1.00[JPT][hapmap]
rs28484691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28513814	1.00[AMR][1000 genomes]
rs28528697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28803929	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3802470	0.81[ASN][1000 genomes]
rs3824483	1.00[EUR][1000 genomes]
rs4537412	0.84[ASN][1000 genomes]
rs56190907	1.00[AMR][1000 genomes]
rs57985290	1.00[EUR][1000 genomes]
rs7034904	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73539651	1.00[EUR][1000 genomes]
rs73539658	1.00[EUR][1000 genomes]
rs73539660	1.00[EUR][1000 genomes]
rs73539663	1.00[EUR][1000 genomes]
rs73547510	1.00[EUR][1000 genomes]
rs73547512	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73547537	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73547538	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73547543	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73547546	1.00[AMR][1000 genomes]
rs73547547	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73547563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73548347	1.00[EUR][1000 genomes]
rs73654646	1.00[AMR][1000 genomes]
rs7863880	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7867279	1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv21023	chr9:99846075-99849809	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99843000-99850000	Weak transcription	Fetal Heart	heart
2	chr9:99849000-99849600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:99849000-99849600	Enhancers	HSMMtube	muscle
4	chr9:99849000-99850800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:99849200-99851600	Enhancers	HSMM	muscle
6	chr9:99849200-99852200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links