Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:38487559..38489078-chr9:99839080..99841852,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229511	Chromatin interaction

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10119016	0.81[ASN][1000 genomes]
rs10122044	0.85[ASN][1000 genomes]
rs10759435	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10980454	0.91[AFR][1000 genomes]
rs10980463	0.85[ASN][1000 genomes]
rs10980538	0.91[ASN][1000 genomes]
rs13285842	0.85[AFR][1000 genomes]
rs13299111	0.87[AFR][1000 genomes]
rs2769139	1.00[JPT][hapmap]
rs28484691	0.86[ASN][1000 genomes]
rs28528697	0.86[ASN][1000 genomes]
rs28803929	0.83[ASN][1000 genomes]
rs3802470	0.86[ASN][1000 genomes]
rs4361859	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4537412	0.90[ASN][1000 genomes]
rs4573386	0.83[ASN][1000 genomes]
rs4743056	0.87[AFR][1000 genomes]
rs6477855	0.91[EUR][1000 genomes]
rs6477872	0.93[EUR][1000 genomes]
rs6477874	0.92[EUR][1000 genomes]
rs6477875	0.87[AFR][1000 genomes]
rs7034904	0.86[ASN][1000 genomes]
rs73547537	0.85[ASN][1000 genomes]
rs73547538	0.85[ASN][1000 genomes]
rs73547543	0.85[ASN][1000 genomes]
rs73547547	0.85[ASN][1000 genomes]
rs73547563	0.81[ASN][1000 genomes]
rs7848519	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7848718	0.93[EUR][1000 genomes]
rs7849720	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7852748	0.83[AFR][1000 genomes]
rs7862725	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7867279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99837800-99841400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr9:99840800-99843000	Enhancers	Fetal Heart	heart
3	chr9:99841200-99841400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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