Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:99814853..99816502-chr9:99820025..99822075,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10115220	0.88[ASN][1000 genomes]
rs10118886	0.86[JPT][hapmap]
rs10123754	0.81[JPT][hapmap]
rs10453219	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10759389	0.83[ASN][1000 genomes]
rs10759391	0.85[ASN][1000 genomes]
rs10980241	0.80[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10980243	0.85[ASN][1000 genomes]
rs10980454	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12236690	0.86[JPT][hapmap]
rs13285842	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13299111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs15394	0.82[JPT][hapmap]
rs16919034	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16924211	0.82[JPT][hapmap]
rs57591566	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6477844	0.86[JPT][hapmap]
rs6477875	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7035822	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7852748	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7863880	0.87[AFR][1000 genomes]
rs7867279	0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs7875800	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053215	chr9:99483926-99824810	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99815200-99824400	Weak transcription	Fetal Intestine Small	intestine
2	chr9:99816200-99834600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:99821000-99822200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:99821000-99823200	Enhancers	HMEC	breast
5	chr9:99821400-99822000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:99821400-99822200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr9:99821400-99822400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:99821400-99822400	Enhancers	NHEK	skin

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