Variant report

Variant	rs13285842
Chromosome Location	chr9:99834301-99834302
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10114720	0.80[ASN][1000 genomes]
rs10118886	0.80[ASN][1000 genomes]
rs10118923	0.80[ASN][1000 genomes]
rs10123754	0.80[ASN][1000 genomes]
rs10123757	0.80[ASN][1000 genomes]
rs10453219	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10739289	0.80[ASN][1000 genomes]
rs10739296	0.82[ASN][1000 genomes]
rs10759406	0.81[ASN][1000 genomes]
rs10759417	0.82[ASN][1000 genomes]
rs10759420	0.82[ASN][1000 genomes]
rs10816926	0.80[ASN][1000 genomes]
rs10816963	0.82[ASN][1000 genomes]
rs10816964	0.81[ASN][1000 genomes]
rs10816981	0.82[ASN][1000 genomes]
rs10816984	0.82[ASN][1000 genomes]
rs10816994	0.82[ASN][1000 genomes]
rs10817013	0.91[ASN][1000 genomes]
rs10980326	0.82[ASN][1000 genomes]
rs10980346	0.82[ASN][1000 genomes]
rs10980396	0.93[ASN][1000 genomes]
rs10980454	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12376012	0.93[ASN][1000 genomes]
rs12376575	0.95[ASN][1000 genomes]
rs12377546	0.82[ASN][1000 genomes]
rs13299111	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs15394	0.80[ASN][1000 genomes]
rs16924211	0.91[ASN][1000 genomes]
rs2004336	0.94[ASN][1000 genomes]
rs34342973	0.82[ASN][1000 genomes]
rs4367680	0.93[ASN][1000 genomes]
rs4501700	0.82[ASN][1000 genomes]
rs4510972	0.82[ASN][1000 genomes]
rs4743056	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57591566	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59995818	0.81[ASN][1000 genomes]
rs62560873	0.92[ASN][1000 genomes]
rs6477875	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7023974	0.81[ASN][1000 genomes]
rs7038926	0.81[ASN][1000 genomes]
rs7039198	0.81[ASN][1000 genomes]
rs7852748	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7857836	0.82[ASN][1000 genomes]
rs7863880	0.85[AFR][1000 genomes]
rs7867279	0.84[AFR][1000 genomes]
rs9792463	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99816200-99834600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:99829200-99834400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:99833400-99835000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:99833400-99835200	Enhancers	Fetal Intestine Large	intestine
5	chr9:99833800-99835000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:99834200-99835200	Enhancers	Fetal Intestine Small	intestine

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