Variant report

Variant	rs10980454
Chromosome Location	chr9:99838121-99838122
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10115220	0.93[ASN][1000 genomes]
rs10453219	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13285842	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13299111	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4743056	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57591566	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477875	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7852748	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7863880	0.91[AFR][1000 genomes]
rs7867279	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99835200-99838200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:99835400-99839400	Weak transcription	Fetal Heart	heart
3	chr9:99835800-99838200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:99836400-99838800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr9:99836600-99838800	Enhancers	HepG2	liver
6	chr9:99836800-99838800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:99837000-99838600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr9:99837400-99838400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr9:99837400-99838600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr9:99837600-99838800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:99837800-99838200	Bivalent Enhancer	HUVEC	blood vessel
12	chr9:99837800-99841400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:99838000-99838200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr9:99838000-99838200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr9:99838000-99838200	Bivalent Enhancer	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links