Variant report

Variant	rs10115220
Chromosome Location	chr9:99836167-99836168
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10453219	0.88[ASN][1000 genomes]
rs10759389	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10759391	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10759399	0.82[EUR][1000 genomes]
rs10759400	0.81[EUR][1000 genomes]
rs10816951	0.81[EUR][1000 genomes]
rs10816953	0.81[EUR][1000 genomes]
rs10817013	0.83[EUR][1000 genomes]
rs10980241	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10980243	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10980396	0.86[EUR][1000 genomes]
rs10980454	0.93[ASN][1000 genomes]
rs12236690	0.81[EUR][1000 genomes]
rs12376012	0.91[EUR][1000 genomes]
rs12376575	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13299111	0.88[ASN][1000 genomes]
rs16919034	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16924211	0.83[AMR][1000 genomes]
rs2004336	0.90[EUR][1000 genomes]
rs4367680	0.87[EUR][1000 genomes]
rs4743056	0.88[ASN][1000 genomes]
rs57591566	0.93[ASN][1000 genomes]
rs6477844	0.83[EUR][1000 genomes]
rs6477875	0.94[ASN][1000 genomes]
rs7035822	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7852748	0.88[ASN][1000 genomes]
rs7873286	0.81[EUR][1000 genomes]
rs7875800	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9792463	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99835000-99836800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr9:99835000-99837200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr9:99835000-99837200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:99835200-99836600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:99835200-99838200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:99835400-99836400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:99835400-99839400	Weak transcription	Fetal Heart	heart
8	chr9:99835600-99836600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:99835800-99836200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr9:99835800-99836600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:99835800-99838200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr9:99836000-99837000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:99836000-99837000	Bivalent Enhancer	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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