Variant report

Variant	rs73547563
Chromosome Location	chr9:99848994-99848995
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10119016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122044	0.92[ASN][1000 genomes]
rs10123351	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10980403	1.00[AMR][1000 genomes]
rs10980430	1.00[AMR][1000 genomes]
rs10980435	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10980463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10980464	1.00[AMR][1000 genomes]
rs10980538	0.86[ASN][1000 genomes]
rs12338332	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340206	1.00[AMR][1000 genomes]
rs12343472	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28484691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28513814	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28528697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28803929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3802470	0.81[ASN][1000 genomes]
rs3824483	1.00[EUR][1000 genomes]
rs4537412	0.84[ASN][1000 genomes]
rs56190907	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57985290	1.00[EUR][1000 genomes]
rs7034904	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73539651	1.00[EUR][1000 genomes]
rs73539658	1.00[EUR][1000 genomes]
rs73539660	1.00[EUR][1000 genomes]
rs73539663	1.00[EUR][1000 genomes]
rs73547510	1.00[EUR][1000 genomes]
rs73547512	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73547537	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73547538	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73547543	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73547546	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73547547	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73548347	1.00[EUR][1000 genomes]
rs73654646	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7863880	0.81[ASN][1000 genomes]
rs7867279	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv21023	chr9:99846075-99849809	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99843000-99850000	Weak transcription	Fetal Heart	heart
2	chr9:99846800-99849000	Weak transcription	HSMMtube	muscle

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