Variant report

Variant	rs73547538
Chromosome Location	chr9:99834803-99834804
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:99799829..99801401-chr9:99834490..99837117,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10119016	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10122044	1.00[ASN][1000 genomes]
rs10123351	1.00[EUR][1000 genomes]
rs10759435	0.86[ASN][1000 genomes]
rs10980463	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28484691	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28528697	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28803929	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3824483	1.00[EUR][1000 genomes]
rs56952410	1.00[AMR][1000 genomes]
rs57985290	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59508316	1.00[AMR][1000 genomes]
rs60476105	1.00[AMR][1000 genomes]
rs60486729	1.00[AMR][1000 genomes]
rs7034904	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73539651	1.00[EUR][1000 genomes]
rs73539658	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73539660	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73539663	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73541942	1.00[AMR][1000 genomes]
rs73543053	1.00[AMR][1000 genomes]
rs73543068	1.00[AMR][1000 genomes]
rs73543091	1.00[AMR][1000 genomes]
rs73547510	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73547512	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73547537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547563	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73548347	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73549944	1.00[AMR][1000 genomes]
rs7863880	0.85[ASN][1000 genomes]
rs7867279	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99833400-99835000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr9:99833400-99835200	Enhancers	Fetal Intestine Large	intestine
3	chr9:99833800-99835000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:99834200-99835200	Enhancers	Fetal Intestine Small	intestine
5	chr9:99834400-99835000	Bivalent Enhancer	HepG2	liver
6	chr9:99834400-99835200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:99834400-99835200	Enhancers	Placenta	Placenta
8	chr9:99834400-99835200	Enhancers	NHEK	skin
9	chr9:99834400-99835400	Enhancers	Fetal Heart	heart
10	chr9:99834400-99835400	Bivalent Enhancer	Hela-S3	cervix
11	chr9:99834400-99835600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:99834600-99835200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr9:99834600-99835200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:99834600-99835400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:99834600-99835400	Enhancers	H9 Cell Line	embryonic stem cell

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