Variant report

Variant	rs73541942
Chromosome Location	chr9:99873281-99873282
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56952410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59508316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60476105	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60486729	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73543053	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73543068	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73543091	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73547537	1.00[AMR][1000 genomes]
rs73547538	1.00[AMR][1000 genomes]
rs73547543	1.00[AMR][1000 genomes]
rs73547547	1.00[AMR][1000 genomes]
rs73549944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73555672	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99850600-99877000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:99867800-99887600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:99871600-99876400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:99871600-99877800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:99871800-99879800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:99872000-99875800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:99872000-99876400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:99872000-99876800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:99872000-99879800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:99872000-99890200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:99872800-99873600	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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