Variant report

Variant	rs73555672
Chromosome Location	chr9:99858872-99858873
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56952410	1.00[AFR][1000 genomes]
rs59508316	1.00[AFR][1000 genomes]
rs60476105	0.95[AFR][1000 genomes]
rs60486729	0.95[AFR][1000 genomes]
rs73541942	1.00[AFR][1000 genomes]
rs73543053	0.95[AFR][1000 genomes]
rs73543068	0.95[AFR][1000 genomes]
rs73543091	0.87[AFR][1000 genomes]
rs73549944	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99850200-99860600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:99850600-99859000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:99850600-99877000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:99851600-99862600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:99856600-99860200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:99856600-99871400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links