Variant report

Variant	rs61744508
Chromosome Location	chr6:119136196-119136197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17080706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2051055	1.00[AMR][1000 genomes]
rs6900809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6904686	1.00[AMR][1000 genomes]
rs6930200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7743261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7758337	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7762510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7765016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7767856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7767880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9688426	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv830788	chr6:119014021-119143652	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1023826	chr6:119026481-119221408	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119116600-119136200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:119122000-119136400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:119122000-119147000	Weak transcription	Stomach Mucosa	stomach
4	chr6:119122200-119136200	Weak transcription	Esophagus	oesophagus
5	chr6:119122200-119136600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:119122200-119147000	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:119122400-119136200	Weak transcription	Pancreas	Pancrea
8	chr6:119122400-119136200	Weak transcription	HepG2	liver
9	chr6:119122400-119136800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:119122400-119146800	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:119122600-119136200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:119122600-119144000	Weak transcription	Brain Angular Gyrus	brain
13	chr6:119125600-119136800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:119125600-119143600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:119126200-119138800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:119128600-119151600	Weak transcription	Colonic Mucosa	Colon
17	chr6:119130600-119146400	Weak transcription	Psoas Muscle	Psoas
18	chr6:119130800-119136200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:119130800-119143000	Weak transcription	Fetal Lung	lung
20	chr6:119131000-119136200	Weak transcription	Ovary	ovary
21	chr6:119131000-119136400	Weak transcription	Spleen	Spleen
22	chr6:119131000-119137000	Weak transcription	K562	blood
23	chr6:119131800-119136600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:119132000-119136200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:119132000-119136200	Weak transcription	Gastric	stomach
26	chr6:119132000-119136400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:119132000-119136400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:119132000-119137000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:119132200-119136200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr6:119132200-119136400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:119132200-119136400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:119132200-119136400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr6:119132200-119136400	Weak transcription	Thymus	Thymus
34	chr6:119132200-119143000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr6:119132200-119143600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:119132200-119145400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr6:119132200-119146400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr6:119132200-119150600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr6:119132400-119136200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:119132400-119136600	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr6:119132400-119146800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr6:119132400-119150800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr6:119132600-119141600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr6:119133000-119137400	Strong transcription	Dnd41	blood
45	chr6:119133200-119136200	Weak transcription	Fetal Brain Female	brain
46	chr6:119133200-119136200	Strong transcription	Placenta	Placenta
47	chr6:119133200-119136400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr6:119133400-119136200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:119133400-119136200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:119133400-119136400	Weak transcription	Brain Germinal Matrix	brain

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