Variant report

Variant	rs61744905
Chromosome Location	chr19:21240722-21240723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs57555291	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57712708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58596145	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58599396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59317841	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59499960	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59555483	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59900403	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59926071	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60366360	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs60467794	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60878533	0.93[EUR][1000 genomes]
rs73926911	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73926912	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73926914	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73926923	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73926925	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8113520	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv817536	chr19:21041855-21348237	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv1850387	chr19:21109758-21294264	Active TSS ZNF genes & repeats Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv911411	chr19:21184533-21263518	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv578949	chr19:21190572-21244049	ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv960811	chr19:21200306-21371757	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	esv3399352	chr19:21232738-21423323	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
11	esv1805898	chr19:21233245-21256249	Strong transcription ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
12	nsv911412	chr19:21233388-21297358	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21204400-21264800	Weak transcription	Right Ventricle	heart
2	chr19:21206200-21241600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr19:21212000-21241400	Weak transcription	Fetal Heart	heart
4	chr19:21221400-21242000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:21222400-21242200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr19:21223000-21244200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:21227400-21241400	ZNF genes & repeats	GM12878-XiMat	blood
8	chr19:21227800-21247200	Weak transcription	HepG2	liver
9	chr19:21230600-21248400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr19:21230800-21243000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr19:21231600-21241000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr19:21231600-21241600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
13	chr19:21231800-21244600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr19:21232200-21241000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
15	chr19:21232200-21241000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
16	chr19:21232200-21241200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
17	chr19:21232200-21242200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr19:21232200-21242400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
19	chr19:21232200-21243600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr19:21232800-21241000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr19:21234200-21242400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr19:21234600-21241400	ZNF genes & repeats	Primary T cells from cord blood	blood
23	chr19:21235000-21241200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
24	chr19:21235200-21242000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr19:21235200-21242600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr19:21235400-21241000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
27	chr19:21235400-21241000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
28	chr19:21235400-21241000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
29	chr19:21235400-21243200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr19:21235600-21241000	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr19:21235600-21241600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
32	chr19:21235800-21241600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr19:21236000-21241200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr19:21236000-21247000	Weak transcription	Pancreas	Pancrea
35	chr19:21236400-21264800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr19:21236600-21240800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr19:21237000-21241000	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
38	chr19:21237000-21241600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
39	chr19:21237200-21241200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr19:21237200-21241200	ZNF genes & repeats	Fetal Muscle Leg	muscle
41	chr19:21237200-21241200	Strong transcription	NH-A	brain
42	chr19:21237200-21241600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr19:21237400-21241000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
44	chr19:21237600-21241200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr19:21237600-21241200	ZNF genes & repeats	Thymus	Thymus
46	chr19:21237600-21241600	ZNF genes & repeats	Fetal Brain Female	brain
47	chr19:21237800-21241000	Strong transcription	Osteobl	bone
48	chr19:21238000-21241200	Strong transcription	Fetal Muscle Trunk	muscle
49	chr19:21238000-21241600	ZNF genes & repeats	HMEC	breast
50	chr19:21238200-21240800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell

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