Variant report

Variant	rs61753628
Chromosome Location	chr7:96653684-96653685
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs60115459	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96647000-96655200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
2	chr7:96648000-96654000	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:96650000-96654200	Active TSS	Osteobl	bone
4	chr7:96650400-96654200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:96650400-96654400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
6	chr7:96651400-96654000	Bivalent/Poised TSS	Fetal Brain Female	brain
7	chr7:96651400-96654400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:96651600-96654400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:96651600-96654400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
10	chr7:96651600-96654400	Bivalent/Poised TSS	Fetal Lung	lung
11	chr7:96652000-96654200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:96652000-96654200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:96652200-96654600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
14	chr7:96652400-96654600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:96652600-96654200	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:96652600-96654200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
17	chr7:96652600-96654600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
18	chr7:96652600-96654600	Bivalent/Poised TSS	NHEK	skin
19	chr7:96652800-96654200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:96652800-96654200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
21	chr7:96652800-96654200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
22	chr7:96652800-96654400	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
23	chr7:96653000-96654400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
24	chr7:96653000-96654400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
25	chr7:96653000-96654600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
26	chr7:96653200-96653800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:96653200-96653800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
28	chr7:96653200-96653800	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
29	chr7:96653200-96654000	Bivalent Enhancer	Spleen	Spleen
30	chr7:96653200-96654200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:96653200-96654200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:96653200-96654200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
33	chr7:96653200-96654200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
34	chr7:96653200-96654200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
35	chr7:96653200-96654200	Enhancers	Gastric	stomach
36	chr7:96653200-96654200	Flanking Bivalent TSS/Enh	Right Ventricle	heart
37	chr7:96653200-96654400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
38	chr7:96653200-96654400	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
39	chr7:96653200-96654400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
40	chr7:96653200-96654400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
41	chr7:96653200-96654400	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
42	chr7:96653200-96654400	Bivalent Enhancer	Liver	Liver
43	chr7:96653200-96654400	Flanking Bivalent TSS/Enh	Placenta	Placenta
44	chr7:96653200-96654400	Bivalent Enhancer	Stomach Mucosa	stomach
45	chr7:96653200-96654400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
46	chr7:96653200-96656600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
47	chr7:96653400-96653800	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
48	chr7:96653400-96653800	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
49	chr7:96653400-96654000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr7:96653400-96654000	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell

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