Variant report

Variant	rs61757657
Chromosome Location	chr5:40843761-40843762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:40843666..40846372-chr5:40846627..40850268,4	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61748216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6889131	1.00[AMR][1000 genomes]
rs7702698	1.00[AMR][1000 genomes]
rs7715491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880438	chr5:40753877-40900717	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	160 gene(s)	inside rSNPs	diseases
2	nsv597877	chr5:40796746-40848803	Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	158 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40836000-40852600	Weak transcription	Small Intestine	intestine
2	chr5:40841200-40844000	Active TSS	Right Atrium	heart
3	chr5:40841400-40852000	Weak transcription	Pancreas	Pancrea
4	chr5:40841800-40843800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr5:40841800-40845000	Weak transcription	Lung	lung
6	chr5:40841800-40852400	Weak transcription	Esophagus	oesophagus
7	chr5:40842200-40852200	Weak transcription	Left Ventricle	heart
8	chr5:40842200-40852600	Weak transcription	Placenta	Placenta
9	chr5:40842200-40853800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:40842400-40843800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr5:40842400-40852000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr5:40842400-40852400	Weak transcription	Liver	Liver
13	chr5:40842400-40852400	Weak transcription	Ovary	ovary
14	chr5:40842400-40852600	Weak transcription	Primary T cells from cord blood	blood
15	chr5:40842400-40853400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr5:40842400-40853800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:40842400-40854200	Weak transcription	Fetal Stomach	stomach
18	chr5:40842400-40854600	Weak transcription	Brain Hippocampus Middle	brain
19	chr5:40842600-40844800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr5:40842600-40847600	Weak transcription	HMEC	breast
21	chr5:40842800-40843800	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr5:40842800-40844000	Enhancers	K562	blood
23	chr5:40842800-40846200	Weak transcription	A549	lung
24	chr5:40842800-40846800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr5:40842800-40849000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr5:40842800-40849200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr5:40842800-40852000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr5:40842800-40853200	Weak transcription	Fetal Intestine Small	intestine
29	chr5:40842800-40854000	Weak transcription	Aorta	Aorta
30	chr5:40842800-40856000	Weak transcription	Right Ventricle	heart
31	chr5:40843000-40846000	Weak transcription	NHLF	lung
32	chr5:40843000-40849000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:40843200-40852200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr5:40843400-40843800	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr5:40843400-40843800	Enhancers	Psoas Muscle	Psoas
36	chr5:40843400-40843800	Enhancers	Stomach Mucosa	stomach
37	chr5:40843400-40844000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr5:40843400-40844000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr5:40843400-40844200	Enhancers	HUVEC	blood vessel
40	chr5:40843400-40848800	Weak transcription	Primary B cells from cord blood	blood
41	chr5:40843400-40851800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr5:40843400-40852400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr5:40843600-40843800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr5:40843600-40843800	Enhancers	Spleen	Spleen
45	chr5:40843600-40844000	Enhancers	Hela-S3	cervix
46	chr5:40843600-40844000	Bivalent Enhancer	HepG2	liver
47	chr5:40843600-40846200	Strong transcription	Primary hematopoietic stem cells	blood
48	chr5:40843600-40854000	Weak transcription	Colon Smooth Muscle	Colon
49	chr5:40843600-40857800	Weak transcription	Osteobl	bone

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