Variant report

Variant	rs61772593
Chromosome Location	chr1:56980031-56980032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56979467..56981113-chr1:56982379..56984173,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162407	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17470169	1.00[AFR][1000 genomes]
rs1759753	1.00[AFR][1000 genomes]
rs1777279	1.00[AFR][1000 genomes]
rs61772578	1.00[AFR][1000 genomes]
rs6674131	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56966000-56980600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:56967000-57002000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56971400-56986200	Genic enhancers	Placenta	Placenta
4	chr1:56972400-56990800	Strong transcription	HSMM	muscle
5	chr1:56972600-56981800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr1:56974600-56982400	Strong transcription	Osteobl	bone
7	chr1:56975000-56981800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:56975000-56981800	Weak transcription	NHEK	skin
9	chr1:56975000-56982000	Strong transcription	Muscle Satellite Cultured Cells	--
10	chr1:56976000-56982600	Genic enhancers	Liver	Liver
11	chr1:56976200-56982600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:56976400-56981400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:56976400-56982200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr1:56976400-56991600	Strong transcription	Fetal Stomach	stomach
15	chr1:56976800-56980400	Weak transcription	Stomach Mucosa	stomach
16	chr1:56976800-56992400	Weak transcription	Brain Germinal Matrix	brain
17	chr1:56977200-56981400	Weak transcription	Small Intestine	intestine
18	chr1:56977200-56982200	Weak transcription	Fetal Heart	heart
19	chr1:56977200-56982400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:56977200-56987200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:56977200-56990600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:56977400-56980200	Strong transcription	Fetal Intestine Large	intestine
23	chr1:56977400-56980600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr1:56977400-56980600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr1:56977400-56981600	Weak transcription	Primary B cells from cord blood	blood
26	chr1:56977400-56981800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:56977400-56982000	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr1:56977400-56982400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:56977600-56980400	Weak transcription	K562	blood
30	chr1:56977600-56981200	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr1:56977600-56983600	Strong transcription	NHLF	lung
32	chr1:56977800-56980200	Strong transcription	Fetal Lung	lung
33	chr1:56977800-56980400	Weak transcription	Psoas Muscle	Psoas
34	chr1:56977800-56980600	Strong transcription	Fetal Muscle Leg	muscle
35	chr1:56977800-56980600	Weak transcription	HSMMtube	muscle
36	chr1:56977800-56981000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr1:56977800-56981200	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr1:56977800-56981400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:56977800-56981400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr1:56977800-56982400	Weak transcription	NH-A	brain
41	chr1:56977800-56983200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr1:56977800-56989200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:56977800-56991200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:56977800-56999200	Weak transcription	A549	lung
45	chr1:56978000-56980400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr1:56978000-56980400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr1:56978000-56980600	Weak transcription	Brain Substantia Nigra	brain
48	chr1:56978000-56980600	Weak transcription	Gastric	stomach
49	chr1:56978000-56981000	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr1:56978000-56981000	Weak transcription	Brain Angular Gyrus	brain

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