Variant report

Variant	rs61772578
Chromosome Location	chr1:56939235-56939236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56937800..56940373-chr1:56942225..56944887,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1041602	0.96[AMR][1000 genomes]
rs1418977	0.96[AMR][1000 genomes]
rs17470169	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1759753	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs1777279	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs1819750	0.96[AMR][1000 genomes]
rs3927760	0.96[AMR][1000 genomes]
rs3927761	0.96[AMR][1000 genomes]
rs41487448	0.96[AMR][1000 genomes]
rs61772592	0.83[AMR][1000 genomes]
rs61772593	1.00[AFR][1000 genomes]
rs61772595	0.83[AMR][1000 genomes]
rs61772618	0.93[AMR][1000 genomes]
rs61772620	0.96[AMR][1000 genomes]
rs61772622	0.96[AMR][1000 genomes]
rs61772623	0.96[AMR][1000 genomes]
rs61772625	0.96[AMR][1000 genomes]
rs61772626	0.83[AMR][1000 genomes]
rs61772627	0.96[AMR][1000 genomes]
rs6674131	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs9437006	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56905400-56942600	Weak transcription	Gastric	stomach
2	chr1:56913800-56943200	Weak transcription	Aorta	Aorta
3	chr1:56924200-56942800	Weak transcription	Right Ventricle	heart
4	chr1:56929400-56942400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:56932000-56943000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:56934400-56942400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:56934400-56942600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:56934600-56942600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:56934800-56943000	Weak transcription	Psoas Muscle	Psoas
10	chr1:56935000-56939800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr1:56935000-56939800	Enhancers	Primary B cells from peripheral blood	blood
12	chr1:56935200-56939400	Weak transcription	Left Ventricle	heart
13	chr1:56935200-56939800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr1:56935200-56942400	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:56935400-56939600	Weak transcription	Lung	lung
16	chr1:56935800-56939400	Enhancers	HepG2	liver
17	chr1:56936000-56942600	Weak transcription	Osteobl	bone
18	chr1:56936200-56939400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:56936400-56939400	Weak transcription	Fetal Heart	heart
20	chr1:56936400-56942600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:56936600-56942600	Weak transcription	Fetal Kidney	kidney
22	chr1:56937400-56939400	Weak transcription	Fetal Lung	lung
23	chr1:56937600-56939600	Enhancers	Primary B cells from cord blood	blood
24	chr1:56938000-56939400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr1:56938200-56939400	Weak transcription	Brain Angular Gyrus	brain
26	chr1:56938600-56940200	Enhancers	Liver	Liver
27	chr1:56938600-56940400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:56938600-56942600	Weak transcription	Placenta	Placenta
29	chr1:56938800-56939400	Enhancers	Colon Smooth Muscle	Colon
30	chr1:56938800-56939800	Enhancers	Stomach Mucosa	stomach
31	chr1:56938800-56940200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:56939000-56939400	Weak transcription	Fetal Stomach	stomach
33	chr1:56939000-56939800	Enhancers	Adipose Nuclei	Adipose
34	chr1:56939000-56939800	Enhancers	Brain Germinal Matrix	brain
35	chr1:56939000-56939800	Enhancers	Esophagus	oesophagus
36	chr1:56939000-56940000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr1:56939000-56940000	Enhancers	Pancreas	Pancrea
38	chr1:56939000-56940000	Enhancers	Right Atrium	heart
39	chr1:56939000-56940000	Enhancers	NHLF	lung
40	chr1:56939000-56940200	Enhancers	NHDF-Ad	bronchial
41	chr1:56939000-56940400	Enhancers	Brain Substantia Nigra	brain
42	chr1:56939000-56942600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr1:56939200-56939400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
44	chr1:56939200-56939600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr1:56939200-56939600	Weak transcription	Spleen	Spleen
46	chr1:56939200-56940000	Enhancers	Brain Anterior Caudate	brain
47	chr1:56939200-56940200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr1:56939200-56940200	Enhancers	Brain Hippocampus Middle	brain
49	chr1:56939200-56940400	Enhancers	Brain Cingulate Gyrus	brain
50	chr1:56939200-56940600	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links