Variant report

Variant rs61772620
Chromosome Location chr1:57007897-57007898
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:56987000-57015000 Genic enhancers NHDF-Ad bronchial
2 chr1:56992800-57011200 Weak transcription Stomach Mucosa stomach
3 chr1:56994000-57012400 Weak transcription Fetal Brain Male brain
4 chr1:56994000-57012800 Weak transcription Fetal Brain Female brain
5 chr1:56999400-57012800 Weak transcription HSMMtube muscle
6 chr1:57000200-57008200 Weak transcription Fetal Kidney kidney
7 chr1:57000400-57011000 Weak transcription Gastric stomach
8 chr1:57000400-57013000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr1:57001200-57018800 Weak transcription A549 lung
10 chr1:57001800-57018600 Weak transcription Small Intestine intestine
11 chr1:57001800-57021800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr1:57002400-57008600 Enhancers Brain Hippocampus Middle brain
13 chr1:57002600-57008600 Enhancers Brain Anterior Caudate brain
14 chr1:57002800-57013200 Weak transcription Placenta Amnion Placenta Amnion
15 chr1:57002800-57018600 Weak transcription Thymus Thymus
16 chr1:57003000-57008000 Enhancers HUES64 Cell Line embryonic stem cell
17 chr1:57003000-57008600 Enhancers H1 Cell Line embryonic stem cell
18 chr1:57003200-57011400 Weak transcription Lung lung
19 chr1:57003200-57019800 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr1:57003400-57008600 Enhancers Ovary ovary
21 chr1:57003400-57015400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr1:57003600-57013200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
23 chr1:57003800-57011200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:57004000-57008000 Enhancers HepG2 liver
25 chr1:57004000-57008200 Enhancers Cortex derived primary cultured neurospheres brain
26 chr1:57004000-57011200 Weak transcription Spleen Spleen
27 chr1:57004000-57014800 Weak transcription Fetal Thymus thymus
28 chr1:57004200-57011400 Weak transcription Esophagus oesophagus
29 chr1:57004400-57013200 Weak transcription Duodenum Mucosa Duodenum
30 chr1:57004600-57008000 Enhancers iPS-20b Cell Line embryonic stem cell
31 chr1:57004600-57008400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr1:57004600-57010400 Enhancers Colon Smooth Muscle Colon
33 chr1:57005200-57008600 Enhancers Psoas Muscle Psoas
34 chr1:57005600-57008000 Weak transcription Right Ventricle heart
35 chr1:57005600-57008400 Weak transcription Brain Angular Gyrus brain
36 chr1:57005600-57009200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
37 chr1:57005600-57013800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr1:57005800-57008000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
39 chr1:57005800-57009200 Weak transcription ES-I3 Cell Line embryonic stem cell
40 chr1:57005800-57010800 Weak transcription Fetal Heart heart
41 chr1:57005800-57011200 Weak transcription Stomach Smooth Muscle stomach
42 chr1:57005800-57013200 Weak transcription ES-WA7 Cell Line embryonic stem cell
43 chr1:57006000-57008000 Enhancers NHLF lung
44 chr1:57006000-57008600 Genic enhancers Fetal Muscle Leg muscle
45 chr1:57006200-57012200 Weak transcription Fetal Intestine Large intestine
46 chr1:57006600-57008000 Weak transcription Brain Germinal Matrix brain
47 chr1:57006600-57008400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr1:57006600-57009200 Weak transcription H9 Cell Line embryonic stem cell
49 chr1:57006600-57009400 Weak transcription HUES6 Cell Line embryonic stem cell
50 chr1:57006600-57010600 Weak transcription Skeletal Muscle Male skeletal muscle

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