Variant report
Variant | rs61772620 |
---|---|
Chromosome Location | chr1:57007897-57007898 |
allele | G/T |
Outlinks | Ensembl   UCSC |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:56987000-57015000 | Genic enhancers | NHDF-Ad | bronchial |
2 | chr1:56992800-57011200 | Weak transcription | Stomach Mucosa | stomach |
3 | chr1:56994000-57012400 | Weak transcription | Fetal Brain Male | brain |
4 | chr1:56994000-57012800 | Weak transcription | Fetal Brain Female | brain |
5 | chr1:56999400-57012800 | Weak transcription | HSMMtube | muscle |
6 | chr1:57000200-57008200 | Weak transcription | Fetal Kidney | kidney |
7 | chr1:57000400-57011000 | Weak transcription | Gastric | stomach |
8 | chr1:57000400-57013000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
9 | chr1:57001200-57018800 | Weak transcription | A549 | lung |
10 | chr1:57001800-57018600 | Weak transcription | Small Intestine | intestine |
11 | chr1:57001800-57021800 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
12 | chr1:57002400-57008600 | Enhancers | Brain Hippocampus Middle | brain |
13 | chr1:57002600-57008600 | Enhancers | Brain Anterior Caudate | brain |
14 | chr1:57002800-57013200 | Weak transcription | Placenta Amnion | Placenta Amnion |
15 | chr1:57002800-57018600 | Weak transcription | Thymus | Thymus |
16 | chr1:57003000-57008000 | Enhancers | HUES64 Cell Line | embryonic stem cell |
17 | chr1:57003000-57008600 | Enhancers | H1 Cell Line | embryonic stem cell |
18 | chr1:57003200-57011400 | Weak transcription | Lung | lung |
19 | chr1:57003200-57019800 | Genic enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
20 | chr1:57003400-57008600 | Enhancers | Ovary | ovary |
21 | chr1:57003400-57015400 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
22 | chr1:57003600-57013200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
23 | chr1:57003800-57011200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
24 | chr1:57004000-57008000 | Enhancers | HepG2 | liver |
25 | chr1:57004000-57008200 | Enhancers | Cortex derived primary cultured neurospheres | brain |
26 | chr1:57004000-57011200 | Weak transcription | Spleen | Spleen |
27 | chr1:57004000-57014800 | Weak transcription | Fetal Thymus | thymus |
28 | chr1:57004200-57011400 | Weak transcription | Esophagus | oesophagus |
29 | chr1:57004400-57013200 | Weak transcription | Duodenum Mucosa | Duodenum |
30 | chr1:57004600-57008000 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
31 | chr1:57004600-57008400 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
32 | chr1:57004600-57010400 | Enhancers | Colon Smooth Muscle | Colon |
33 | chr1:57005200-57008600 | Enhancers | Psoas Muscle | Psoas |
34 | chr1:57005600-57008000 | Weak transcription | Right Ventricle | heart |
35 | chr1:57005600-57008400 | Weak transcription | Brain Angular Gyrus | brain |
36 | chr1:57005600-57009200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
37 | chr1:57005600-57013800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
38 | chr1:57005800-57008000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
39 | chr1:57005800-57009200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
40 | chr1:57005800-57010800 | Weak transcription | Fetal Heart | heart |
41 | chr1:57005800-57011200 | Weak transcription | Stomach Smooth Muscle | stomach |
42 | chr1:57005800-57013200 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
43 | chr1:57006000-57008000 | Enhancers | NHLF | lung |
44 | chr1:57006000-57008600 | Genic enhancers | Fetal Muscle Leg | muscle |
45 | chr1:57006200-57012200 | Weak transcription | Fetal Intestine Large | intestine |
46 | chr1:57006600-57008000 | Weak transcription | Brain Germinal Matrix | brain |
47 | chr1:57006600-57008400 | Strong transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
48 | chr1:57006600-57009200 | Weak transcription | H9 Cell Line | embryonic stem cell |
49 | chr1:57006600-57009400 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
50 | chr1:57006600-57010600 | Weak transcription | Skeletal Muscle Male | skeletal muscle |