Variant report

Variant	rs61774283
Chromosome Location	chr1:80508170-80508171
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1029202	0.81[EUR][1000 genomes]
rs10493658	0.89[EUR][1000 genomes]
rs10874112	0.85[EUR][1000 genomes]
rs11162914	0.81[EUR][1000 genomes]
rs11578381	0.89[EUR][1000 genomes]
rs12032820	0.83[ASN][1000 genomes]
rs12038492	0.82[ASN][1000 genomes]
rs12120142	0.89[EUR][1000 genomes]
rs12120477	0.89[EUR][1000 genomes]
rs12120643	0.88[EUR][1000 genomes]
rs12123981	0.89[EUR][1000 genomes]
rs12124056	0.89[EUR][1000 genomes]
rs12124631	0.82[EUR][1000 genomes]
rs12124976	0.89[EUR][1000 genomes]
rs12125676	0.90[EUR][1000 genomes]
rs12134942	0.86[EUR][1000 genomes]
rs12733070	0.88[EUR][1000 genomes]
rs1999726	0.83[ASN][1000 genomes]
rs2184613	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2388958	0.86[EUR][1000 genomes]
rs6424682	0.89[EUR][1000 genomes]
rs6424683	0.89[EUR][1000 genomes]
rs6424684	0.84[EUR][1000 genomes]
rs6660827	0.85[EUR][1000 genomes]
rs6699329	0.89[EUR][1000 genomes]
rs7549131	0.89[EUR][1000 genomes]
rs7549977	0.89[EUR][1000 genomes]
rs7555560	0.91[EUR][1000 genomes]
rs951405	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012286	chr1:80057078-81005153	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv535018	chr1:80057078-81005153	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1000792	chr1:80076146-81015283	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1002522	chr1:80210698-80532133	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1011192	chr1:80226910-80532133	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1014763	chr1:80231767-80529703	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv535021	chr1:80231767-80529703	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv462184	chr1:80297950-80731568	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv546645	chr1:80297950-80731568	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv34144	chr1:80321018-80572745	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv871076	chr1:80420407-80556815	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv546646	chr1:80455734-80547435	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv871739	chr1:80455734-80556815	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv546647	chr1:80463537-80556815	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv871474	chr1:80463537-80556815	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases
16	nsv871192	chr1:80477880-80542078	Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
17	nsv871251	chr1:80477880-80556815	Active TSS Enhancers Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
18	nsv462195	chr1:80483974-80556815	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	diseases
19	nsv546648	chr1:80483974-80556815	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
20	nsv546649	chr1:80486347-80542078	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
21	nsv871158	chr1:80486347-80542078	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
22	nsv871935	chr1:80486347-80556815	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases
23	nsv870523	chr1:80486347-80662898	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv1012630	chr1:80496394-80761197	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
25	nsv871577	chr1:80498496-80556815	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
26	nsv871661	chr1:80498496-80563300	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
27	nsv871201	chr1:80498496-80631231	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
28	nsv871492	chr1:80498496-80641525	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
29	nsv947277	chr1:80502617-80510960	Weak transcription Active TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:80507600-80508200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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