Variant report

Variant	rs61775159
Chromosome Location	chr1:10852977-10852978
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:10712004..10714801-chr1:10852157..10855382,3	MCF-7	breast:
2	chr1:10852601..10855720-chr1:10959417..10961902,3	MCF-7	breast:
3	chr1:10841137..10843114-chr1:10851742..10854578,2	MCF-7	breast:
4	chr1:10842014..10843891-chr1:10851096..10853809,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28716527	1.00[AMR][1000 genomes]
rs61777360	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6673483	1.00[AMR][1000 genomes]
rs6681793	1.00[AMR][1000 genomes]
rs74052531	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv29966	chr1:10676800-10874152	Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870849	chr1:10694125-10894724	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv529981	chr1:10697093-11353487	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
4	nsv832314	chr1:10704811-10859919	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2757723	chr1:10742502-11055147	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv2758921	chr1:10742502-11055147	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv871772	chr1:10832322-10894724	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv870589	chr1:10840905-10901994	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10832600-10853400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:10849000-10853400	Weak transcription	Pancreas	Pancrea
3	chr1:10849000-10853400	Weak transcription	Spleen	Spleen
4	chr1:10849200-10853400	Weak transcription	Esophagus	oesophagus
5	chr1:10849200-10853400	Weak transcription	HMEC	breast
6	chr1:10849600-10853400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:10849600-10853400	Weak transcription	Right Atrium	heart
8	chr1:10849800-10853000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:10850200-10853200	Enhancers	Fetal Intestine Large	intestine
10	chr1:10850200-10853200	Weak transcription	Right Ventricle	heart
11	chr1:10850200-10853400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:10850400-10853800	Weak transcription	Gastric	stomach
13	chr1:10851400-10853400	Enhancers	Hela-S3	cervix
14	chr1:10851600-10853200	Enhancers	NHEK	skin
15	chr1:10851600-10853800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:10851800-10853400	Weak transcription	Colonic Mucosa	Colon
17	chr1:10851800-10853400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr1:10851800-10853400	Weak transcription	Left Ventricle	heart
19	chr1:10851800-10853400	Weak transcription	Stomach Mucosa	stomach
20	chr1:10852000-10853000	Weak transcription	Colon Smooth Muscle	Colon
21	chr1:10852000-10853000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr1:10852000-10853000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr1:10852000-10853600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:10852200-10853000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr1:10852200-10853200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:10852200-10853200	Enhancers	Fetal Intestine Small	intestine
27	chr1:10852200-10853200	Weak transcription	Psoas Muscle	Psoas
28	chr1:10852200-10853200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr1:10852200-10853600	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr1:10852200-10853600	Weak transcription	HSMMtube	muscle
31	chr1:10852400-10853200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
32	chr1:10852600-10853200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr1:10852600-10853200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
34	chr1:10852600-10853200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr1:10852600-10853400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:10852800-10853200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
37	chr1:10852800-10853200	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr1:10852800-10853200	Bivalent Enhancer	A549	lung
39	chr1:10852800-10853800	Enhancers	Fetal Heart	heart

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