Variant report

Variant	rs6673483
Chromosome Location	chr1:10656827-10656828
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:10656580..10658431-chr1:10672965..10675742,2	K562	blood:
2	chr1:10655023..10657893-chr1:10665049..10667461,2	K562	blood:
3	chr1:10651916..10653632-chr1:10656825..10658419,2	MCF-7	breast:
4	chr1:10655095..10656837-chr1:10658126..10659763,2	K562	blood:
5	chr1:10656392..10660259-chr1:10661740..10664446,4	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28716527	1.00[AMR][1000 genomes]
rs61775159	1.00[AMR][1000 genomes]
rs61777360	1.00[AMR][1000 genomes]
rs6659004	1.00[AMR][1000 genomes]
rs6681793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv275132	chr1:10656324-10657912	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10589400-10664800	Weak transcription	Aorta	Aorta
2	chr1:10603000-10659000	Weak transcription	Primary B cells from cord blood	blood
3	chr1:10605000-10659000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:10628400-10661600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr1:10629800-10659000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:10631800-10659200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:10632600-10698000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr1:10636600-10658000	Weak transcription	Spleen	Spleen
9	chr1:10637400-10659000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:10638400-10657400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr1:10638400-10661600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:10638600-10661600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr1:10639800-10659200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr1:10644200-10683400	Weak transcription	K562	blood
15	chr1:10649400-10657800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:10650000-10659200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr1:10650200-10670600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr1:10651200-10659200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:10651400-10658400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:10651400-10659000	Weak transcription	Dnd41	blood
21	chr1:10651400-10659200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr1:10651400-10672800	Weak transcription	Thymus	Thymus
23	chr1:10651600-10715800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr1:10652000-10657000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr1:10652000-10657400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:10652000-10657600	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr1:10652000-10659000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr1:10652000-10659000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr1:10652200-10658400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:10652400-10657400	Weak transcription	Adipose Nuclei	Adipose
31	chr1:10652400-10657600	Weak transcription	HSMMtube	muscle
32	chr1:10652400-10658800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr1:10652400-10661400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr1:10652400-10678400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr1:10653400-10660800	Weak transcription	Fetal Heart	heart
36	chr1:10653600-10657000	Weak transcription	Fetal Thymus	thymus
37	chr1:10653600-10688600	Weak transcription	Colon Smooth Muscle	Colon
38	chr1:10654200-10658400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr1:10654800-10657000	Weak transcription	Lung	lung
40	chr1:10654800-10661400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr1:10654800-10666200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr1:10654800-10691600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr1:10655000-10657200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:10655000-10657400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr1:10655000-10657400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr1:10655000-10657400	Weak transcription	HepG2	liver
47	chr1:10655000-10657600	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr1:10655200-10657200	Weak transcription	Fetal Kidney	kidney
49	chr1:10655200-10657400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr1:10655200-10657600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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