Variant report

Variant	rs61780310
Chromosome Location	chr1:67659353-67659354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12562213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129680	0.88[ASN][1000 genomes]
rs17129698	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17129700	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28464018	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61780311	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61780312	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61780314	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61780315	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461751	chr1:67479598-67689036	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv546445	chr1:67479598-67689036	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67656000-67659400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:67656000-67661200	Weak transcription	Small Intestine	intestine
3	chr1:67656000-67663400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr1:67656800-67661400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:67656800-67661400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:67657400-67661800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr1:67657800-67659400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr1:67658000-67661400	Enhancers	GM12878-XiMat	blood
9	chr1:67658200-67660400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:67658400-67659800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:67658400-67661400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr1:67658600-67661600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr1:67658800-67660000	Enhancers	K562	blood
14	chr1:67659000-67660000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:67659200-67662000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links