Variant report

Variant	rs61780312
Chromosome Location	chr1:67661648-67661649
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12562213	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129680	0.88[ASN][1000 genomes]
rs17129698	0.88[ASN][1000 genomes]
rs17129700	0.88[ASN][1000 genomes]
rs28464018	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61780310	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61780311	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61780314	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61780315	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461751	chr1:67479598-67689036	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv546445	chr1:67479598-67689036	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67656000-67663400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr1:67657400-67661800	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr1:67659200-67662000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:67659400-67661800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr1:67659400-67662000	Enhancers	Primary T cells from cord blood	blood
6	chr1:67659400-67662800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:67660200-67662000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:67661400-67662600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:67661400-67662600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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