Variant report

Variant	rs61780647
Chromosome Location	chr1:93936610-93936611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11164936	0.84[ASN][1000 genomes]
rs11164939	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11164941	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12034656	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1593516	0.93[ASN][1000 genomes]
rs17109958	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17110058	0.97[EUR][1000 genomes]
rs2433279	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2624436	0.81[ASN][1000 genomes]
rs3767966	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61784068	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6541379	0.84[AMR][1000 genomes]
rs7543847	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93915200-93937000	Weak transcription	Esophagus	oesophagus
2	chr1:93915200-93937000	Weak transcription	Lung	lung
3	chr1:93917600-93937200	Weak transcription	Fetal Brain Male	brain
4	chr1:93919800-93937000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:93920000-93936800	Weak transcription	NH-A	brain
6	chr1:93920000-93943800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:93921200-93937000	Weak transcription	Left Ventricle	heart
8	chr1:93921200-93939800	Weak transcription	Right Ventricle	heart
9	chr1:93922600-93944000	Weak transcription	Gastric	stomach
10	chr1:93924400-93937000	Weak transcription	Fetal Lung	lung
11	chr1:93925800-93937000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr1:93926000-93937200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:93927600-93943800	Weak transcription	Pancreas	Pancrea
14	chr1:93929000-93946400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:93930000-93937200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:93930600-93943600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr1:93933200-93936800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:93933200-93937600	Weak transcription	Fetal Kidney	kidney
19	chr1:93933400-93937000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:93933400-93943800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr1:93933600-93937000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr1:93933800-93936800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:93934200-93939000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:93934200-93943600	Weak transcription	Fetal Intestine Small	intestine
25	chr1:93934200-93943800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:93935600-93937600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr1:93935800-93936800	Weak transcription	Hela-S3	cervix
28	chr1:93935800-93937200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:93936000-93937200	Weak transcription	HepG2	liver
30	chr1:93936000-93937400	Enhancers	H1 Cell Line	embryonic stem cell
31	chr1:93936400-93937200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr1:93936400-93938000	Enhancers	A549	lung
33	chr1:93936600-93937000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr1:93936600-93937000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr1:93936600-93937400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr1:93936600-93937400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr1:93936600-93937400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr1:93936600-93937800	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr1:93936600-93938000	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr1:93936600-93938000	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links