Variant report

Variant	rs61782103
Chromosome Location	chr1:101579413-101579414
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs61780316	1.00[AMR][1000 genomes]
rs61780322	1.00[AMR][1000 genomes]
rs61782086	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61782145	1.00[AMR][1000 genomes]
rs72736243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001142	chr1:101399403-101783520	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv535034	chr1:101399403-101783520	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv998086	chr1:101479700-101644198	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1008980	chr1:101501453-101620199	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:101577400-101586800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr1:101578400-101581600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:101578400-101584200	Weak transcription	Liver	Liver
4	chr1:101578400-101584200	Weak transcription	K562	blood
5	chr1:101578600-101584000	Weak transcription	Primary T cells from cord blood	blood
6	chr1:101578600-101584600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr1:101578600-101584800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:101578600-101585600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr1:101578600-101585600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:101578600-101586000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr1:101578800-101585600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr1:101578800-101585800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr1:101578800-101586400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr1:101578800-101587000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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