Variant report

Variant	rs61782145
Chromosome Location	chr1:101620362-101620363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs61780316	1.00[AMR][1000 genomes]
rs61780322	1.00[AMR][1000 genomes]
rs61782086	1.00[AMR][1000 genomes]
rs61782103	1.00[AMR][1000 genomes]
rs72736243	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001142	chr1:101399403-101783520	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv535034	chr1:101399403-101783520	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv998086	chr1:101479700-101644198	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:101604800-101631000	Weak transcription	Right Atrium	heart
2	chr1:101615200-101624000	Weak transcription	Left Ventricle	heart
3	chr1:101616800-101624600	Weak transcription	Adipose Nuclei	Adipose
4	chr1:101618800-101631000	Weak transcription	Psoas Muscle	Psoas
5	chr1:101619200-101621000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:101619400-101621800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:101619600-101620600	Enhancers	Fetal Lung	lung
8	chr1:101619800-101620800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:101620000-101620600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:101620000-101621200	Enhancers	Fetal Brain Male	brain
11	chr1:101620200-101621000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:101620200-101621000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:101620200-101621600	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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