Variant report

Variant	rs61782946
Chromosome Location	chr1:77683671-77683672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:77677708..77680059-chr1:77682131..77685030,3	K562	blood:
2	chr1:77679203..77681796-chr1:77682341..77684705,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17369082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17637028	0.97[EUR][1000 genomes]
rs61782910	0.97[EUR][1000 genomes]
rs61782945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006887	chr1:77566348-77698128	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv520629	chr1:77584846-77695854	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv525188	chr1:77655651-77695854	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77626000-77684200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:77648400-77684000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:77650800-77684200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:77655200-77684000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:77670200-77683800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr1:77670200-77684000	Weak transcription	Adipose Nuclei	Adipose
7	chr1:77671800-77684200	Weak transcription	Fetal Intestine Small	intestine
8	chr1:77672000-77684000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:77672000-77684200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr1:77672000-77684200	Weak transcription	Primary B cells from cord blood	blood
11	chr1:77672600-77684200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr1:77673600-77684200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:77681200-77683800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr1:77681600-77684000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr1:77682000-77684000	Enhancers	Primary T cells from cord blood	blood
16	chr1:77682000-77684000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr1:77682000-77684200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr1:77682200-77684200	Weak transcription	Colon Smooth Muscle	Colon
19	chr1:77682400-77684200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr1:77682600-77684200	Weak transcription	Small Intestine	intestine
21	chr1:77682800-77683800	Enhancers	Dnd41	blood
22	chr1:77682800-77684000	Enhancers	NHDF-Ad	bronchial
23	chr1:77682800-77684200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr1:77682800-77686400	Active TSS	GM12878-XiMat	blood
25	chr1:77683000-77683800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr1:77683000-77684000	Enhancers	NHEK	skin
27	chr1:77683200-77684000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr1:77683200-77684000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr1:77683200-77684000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr1:77683200-77684000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr1:77683200-77684000	Enhancers	HMEC	breast
32	chr1:77683200-77684200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:77683400-77683800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr1:77683400-77683800	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr1:77683400-77683800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr1:77683400-77683800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:77683400-77684000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr1:77683400-77684000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr1:77683400-77684000	Enhancers	Hela-S3	cervix
40	chr1:77683400-77684000	Enhancers	HepG2	liver
41	chr1:77683400-77684200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr1:77683400-77684200	Weak transcription	Brain Angular Gyrus	brain
43	chr1:77683400-77684400	Enhancers	Brain Hippocampus Middle	brain
44	chr1:77683600-77683800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr1:77683600-77683800	Weak transcription	NHLF	lung
46	chr1:77683600-77684200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr1:77683600-77684400	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr1:77683600-77686200	Active TSS	K562	blood

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