Variant report

Variant	rs61786354
Chromosome Location	chr1:97769910-97769911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10157665	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10465749	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11582955	0.81[EUR][1000 genomes]
rs11583545	0.81[EUR][1000 genomes]
rs11589238	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12029106	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12030332	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12032827	0.82[EUR][1000 genomes]
rs12046744	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12049622	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2049112	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28755414	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4264037	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56300389	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57555420	0.82[EUR][1000 genomes]
rs58203161	0.82[EUR][1000 genomes]
rs61786278	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61787967	0.83[EUR][1000 genomes]
rs61787977	0.80[EUR][1000 genomes]
rs6700670	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72726670	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72726689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7527272	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv530048	chr1:97457175-98031501	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007950	chr1:97466488-98021146	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv533039	chr1:97665736-98343102	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv871536	chr1:97744048-97771947	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
6	nsv869751	chr1:97749598-97790476	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97720600-97772000	Weak transcription	Ovary	ovary
2	chr1:97724000-97773200	Weak transcription	Lung	lung
3	chr1:97736800-97771600	Weak transcription	Left Ventricle	heart
4	chr1:97737800-97771600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:97745000-97773400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:97745200-97771800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:97745200-97773400	Weak transcription	NHDF-Ad	bronchial
8	chr1:97746000-97770600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:97750600-97770000	Weak transcription	HSMM	muscle
10	chr1:97750800-97770000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:97753400-97773200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:97754200-97773200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:97756000-97772400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr1:97756800-97773200	Weak transcription	Small Intestine	intestine
15	chr1:97757800-97773200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr1:97757800-97773800	Weak transcription	Osteobl	bone
17	chr1:97758000-97770400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr1:97758200-97771600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr1:97759200-97771600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr1:97759200-97772200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr1:97759600-97771400	Weak transcription	Fetal Intestine Small	intestine
22	chr1:97759800-97776000	Weak transcription	Pancreas	Pancrea
23	chr1:97760000-97770600	Weak transcription	Aorta	Aorta
24	chr1:97760000-97772600	Weak transcription	Thymus	Thymus
25	chr1:97760200-97772600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:97760800-97770000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:97761400-97770200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr1:97762800-97772200	Weak transcription	HSMMtube	muscle
29	chr1:97766400-97771600	Weak transcription	Fetal Brain Male	brain
30	chr1:97767200-97772000	Strong transcription	Liver	Liver
31	chr1:97768400-97770000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr1:97768400-97771000	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr1:97768400-97771000	Weak transcription	Fetal Intestine Large	intestine
34	chr1:97768400-97772200	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr1:97768600-97771000	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr1:97769200-97770200	Weak transcription	Brain Anterior Caudate	brain
37	chr1:97769200-97781800	Weak transcription	NHLF	lung
38	chr1:97769400-97772000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr1:97769600-97770000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr1:97769600-97770000	Enhancers	Fetal Heart	heart
41	chr1:97769600-97770400	Enhancers	Brain Cingulate Gyrus	brain
42	chr1:97769600-97770400	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr1:97769600-97770400	Enhancers	Fetal Stomach	stomach
44	chr1:97769600-97770400	Enhancers	Rectal Smooth Muscle	rectum
45	chr1:97769600-97771000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr1:97769600-97771800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr1:97769600-97772000	Strong transcription	Primary T cells from cord blood	blood
48	chr1:97769600-97772200	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr1:97769800-97770000	Enhancers	Brain Angular Gyrus	brain
50	chr1:97769800-97770400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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