Variant report

Variant	rs61787967
Chromosome Location	chr21:27292911-27292912
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10127817	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10465749	0.82[EUR][1000 genomes]
rs11582955	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11583545	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11589238	0.82[EUR][1000 genomes]
rs12029106	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12030332	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12046744	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12049622	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2049112	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28755414	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4264037	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55700077	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56300389	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56361361	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57058326	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57555420	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58203161	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59879323	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61786354	0.83[EUR][1000 genomes]
rs61787977	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6593646	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6686712	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6698780	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6698789	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6700670	0.82[EUR][1000 genomes]
rs6701415	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72726689	0.83[EUR][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:27255800-27347000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr21:27260200-27298400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr21:27266800-27311400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr21:27270400-27307000	Weak transcription	Hela-S3	cervix
5	chr21:27276200-27299400	Weak transcription	HSMMtube	muscle
6	chr21:27276400-27307200	Weak transcription	A549	lung
7	chr21:27277600-27297400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr21:27278400-27303200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr21:27284400-27297000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr21:27284400-27307200	Weak transcription	Primary T cells from cord blood	blood
11	chr21:27284600-27297400	Weak transcription	Fetal Intestine Small	intestine
12	chr21:27284600-27297600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr21:27284600-27317000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr21:27284800-27299400	Weak transcription	Fetal Lung	lung
15	chr21:27284800-27317800	Weak transcription	Fetal Intestine Large	intestine
16	chr21:27285000-27297400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr21:27285000-27297600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr21:27285000-27297600	Weak transcription	NHEK	skin
19	chr21:27285000-27298400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr21:27285000-27302000	Weak transcription	HSMM	muscle
21	chr21:27285000-27302200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr21:27285000-27302200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr21:27285000-27311000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr21:27285200-27297600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr21:27285400-27307200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr21:27286400-27298800	Weak transcription	Fetal Kidney	kidney
27	chr21:27286800-27297000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr21:27286800-27317800	Weak transcription	Primary B cells from cord blood	blood
29	chr21:27287800-27298400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr21:27287800-27303800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr21:27288000-27297400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr21:27288000-27303000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr21:27288000-27311000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr21:27288200-27297000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr21:27288200-27297800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr21:27288200-27304600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr21:27288400-27297600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr21:27288600-27297000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr21:27288600-27301600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr21:27289200-27297400	Weak transcription	HMEC	breast
41	chr21:27289400-27297000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr21:27289400-27297200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr21:27289600-27297600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr21:27290600-27299800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr21:27290800-27297200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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