Variant report

Variant	rs61791975
Chromosome Location	chr4:28682598-28682599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10222824	0.88[ASN][1000 genomes]
rs10222993	0.88[ASN][1000 genomes]
rs10939223	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11731287	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12650463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13111564	0.81[EUR][1000 genomes]
rs13125878	0.81[EUR][1000 genomes]
rs13126238	0.81[EUR][1000 genomes]
rs13135668	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13151129	0.84[ASN][1000 genomes]
rs1389170	0.88[ASN][1000 genomes]
rs1473899	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1493137	0.89[ASN][1000 genomes]
rs1493149	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1988335	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28830817	0.88[ASN][1000 genomes]
rs34208776	0.88[ASN][1000 genomes]
rs34481983	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34879877	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35032764	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35295695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35439766	0.89[ASN][1000 genomes]
rs35642022	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35769888	0.83[EUR][1000 genomes]
rs35806927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4413395	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61793746	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs756291	0.88[ASN][1000 genomes]
rs7664755	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7692129	0.88[ASN][1000 genomes]
rs7694223	0.87[EUR][1000 genomes]
rs7698388	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757926	chr4:28543958-28839437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759239	chr4:28543958-28839437	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829894	chr4:28587323-28740840	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1848641	chr4:28588964-28760835	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv878782	chr4:28624265-28706757	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv34764	chr4:28632207-28722831	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2757050	chr4:28632207-28769118	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv433218	chr4:28641062-28732481	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv441865	chr4:28642333-28730824	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv34271	chr4:28642726-28754977	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv878783	chr4:28680520-28843029	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
12	nsv878784	chr4:28680520-29069894	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28680000-28682600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:28681600-28684400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:28681600-28684400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:28681800-28684000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:28682000-28682800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:28682000-28682800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr4:28682200-28682800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:28682200-28684400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:28682200-28685400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:28682400-28682800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:28682400-28684200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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