Variant report

Variant	rs61794665
Chromosome Location	chr3:159135156-159135157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11920486	0.85[EUR][1000 genomes]
rs34202807	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34566304	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35342196	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35556756	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35922036	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56264622	0.85[EUR][1000 genomes]
rs59583574	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61378344	0.85[EUR][1000 genomes]
rs61794673	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61795455	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs870852	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1004990	chr3:159090974-159174954	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159134200-159137200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:159134600-159136000	Enhancers	Osteobl	bone
3	chr3:159134600-159136600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:159134600-159137200	Enhancers	HSMM	muscle
5	chr3:159134800-159135800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:159134800-159137200	Enhancers	HSMMtube	muscle
7	chr3:159135000-159137200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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