Variant report

Variant	rs61794673
Chromosome Location	chr3:159149675-159149676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11920486	0.81[EUR][1000 genomes]
rs34202807	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34566304	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35342196	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35556756	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35922036	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56264622	0.81[EUR][1000 genomes]
rs59583574	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61378344	0.81[EUR][1000 genomes]
rs61794665	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61795455	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs870852	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1004990	chr3:159090974-159174954	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159149600-159151800	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links