Variant report

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12508739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12512667	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34067925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35036278	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4563460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6847748	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7667395	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9884332	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30914200-30947200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:30920600-30947400	Weak transcription	Fetal Stomach	stomach
3	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
4	chr4:30935200-30947400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:30938200-30945800	Enhancers	Fetal Intestine Small	intestine
6	chr4:30938400-30941800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:30939000-30941800	Enhancers	NHEK	skin
8	chr4:30939600-30945000	Enhancers	Fetal Intestine Large	intestine
9	chr4:30940400-30943400	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr4:30940600-30941800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:30940800-30941800	Enhancers	Hela-S3	cervix
12	chr4:30941000-30944800	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:30941200-30943200	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr4:30941400-30941800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:30941400-30944800	Weak transcription	Fetal Heart	heart
16	chr4:30941400-30944800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr4:30941600-30945000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:30941600-30945000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr4:30941600-30947200	Weak transcription	HMEC	breast
20	chr4:30941600-30951800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search: