Variant report

Variant	rs9884332
Chromosome Location	chr4:30886890-30886891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10001740	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10755210	0.84[EUR][1000 genomes]
rs10939315	0.83[EUR][1000 genomes]
rs11935059	0.83[EUR][1000 genomes]
rs12508739	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12512667	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34067925	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35036278	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4352435	0.83[EUR][1000 genomes]
rs4352436	0.83[EUR][1000 genomes]
rs4386561	0.86[AFR][1000 genomes]
rs4408918	0.81[EUR][1000 genomes]
rs4422383	0.83[EUR][1000 genomes]
rs4563460	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4692482	0.86[AFR][1000 genomes]
rs61795878	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6847748	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6858549	0.83[EUR][1000 genomes]
rs7667395	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7692684	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7692914	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv966258	chr4:30886100-30889434	Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
2	chr4:30879800-30893000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:30883200-30899000	Weak transcription	Aorta	Aorta
4	chr4:30886600-30889600	Weak transcription	Fetal Heart	heart
5	chr4:30886800-30887200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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