Variant report

Variant	rs10939315
Chromosome Location	chr4:30879128-30879129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10755210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934243	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11935059	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11938996	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11946165	0.98[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13104143	0.92[ASN][1000 genomes]
rs13144831	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13150083	0.84[AFR][1000 genomes]
rs35509507	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35805877	0.98[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4269140	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4352435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4352436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4408918	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4422383	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61794484	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61794485	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6811147	0.98[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6811465	0.98[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6842171	0.97[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6842574	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6842896	0.98[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6858549	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7674446	0.98[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9884332	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30855200-30879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:30868800-30879200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:30868800-30886800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:30870200-30879400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
6	chr4:30873200-30879600	Weak transcription	Aorta	Aorta
7	chr4:30877600-30884000	Weak transcription	Fetal Heart	heart
8	chr4:30878000-30885400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:30878800-30879400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:30879000-30879200	Enhancers	NHEK	skin
11	chr4:30879000-30879400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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