Variant report

Variant	rs13104143
Chromosome Location	chr4:30861101-30861102
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10755210	0.92[ASN][1000 genomes]
rs10939315	0.92[ASN][1000 genomes]
rs11935059	0.88[ASN][1000 genomes]
rs13137577	0.83[EUR][1000 genomes]
rs13149475	0.83[EUR][1000 genomes]
rs13150083	0.84[EUR][1000 genomes]
rs13150968	0.85[EUR][1000 genomes]
rs13152756	0.82[EUR][1000 genomes]
rs35363488	0.81[EUR][1000 genomes]
rs35857516	0.82[EUR][1000 genomes]
rs36173628	0.83[EUR][1000 genomes]
rs4352435	0.92[ASN][1000 genomes]
rs4352436	0.92[ASN][1000 genomes]
rs4408918	0.88[ASN][1000 genomes]
rs4422383	0.95[ASN][1000 genomes]
rs56037166	0.82[EUR][1000 genomes]
rs56338231	0.81[EUR][1000 genomes]
rs6858549	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30849200-30872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:30855200-30879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:30855600-30867400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:30855800-30862000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:30856200-30868600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:30857200-30868200	Weak transcription	Aorta	Aorta
7	chr4:30859400-30864200	Weak transcription	Fetal Lung	lung
8	chr4:30859800-30864200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:30860600-30864800	Weak transcription	Fetal Heart	heart
10	chr4:30860800-30861600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:30860800-30862800	Weak transcription	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links