Variant report

Variant	rs4408918
Chromosome Location	chr4:30880288-30880289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10755210	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10939315	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11934243	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11935059	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11938996	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11946165	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13104143	0.88[ASN][1000 genomes]
rs13144831	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35509507	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35805877	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4269140	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4352435	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4352436	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4422383	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61794484	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61794485	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6811147	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6811465	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6842171	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6842574	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6842896	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6858549	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7674446	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9884332	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30868800-30886800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
3	chr4:30877600-30884000	Weak transcription	Fetal Heart	heart
4	chr4:30878000-30885400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:30879800-30880600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr4:30879800-30893000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:30880000-30881200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:30880000-30882400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:30880200-30882400	Weak transcription	Aorta	Aorta

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