Variant report

Variant	rs6842574
Chromosome Location	chr4:30884942-30884943
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10001740	0.84[EUR][1000 genomes]
rs10755210	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10939315	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11934243	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11935059	0.98[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11938996	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11946165	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12503052	0.85[ASN][1000 genomes]
rs13137577	0.87[ASN][1000 genomes]
rs13144831	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13149475	0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs13150083	0.90[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs13150968	0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs13152756	0.87[ASN][1000 genomes]
rs1823196	0.81[JPT][hapmap]
rs34297806	0.87[ASN][1000 genomes]
rs34410526	0.87[ASN][1000 genomes]
rs35186637	0.83[ASN][1000 genomes]
rs35309740	0.87[ASN][1000 genomes]
rs35363488	0.87[ASN][1000 genomes]
rs35509507	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35805877	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35857516	0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs36173628	0.87[ASN][1000 genomes]
rs4269140	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4293757	0.90[JPT][hapmap]
rs4305479	0.87[ASN][1000 genomes]
rs4352435	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4352436	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4408918	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4422383	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs55982008	0.87[ASN][1000 genomes]
rs56037166	0.87[ASN][1000 genomes]
rs56338231	0.87[ASN][1000 genomes]
rs60551461	0.87[ASN][1000 genomes]
rs61794484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61794485	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6811147	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6811465	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6842171	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6842896	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6846615	0.90[JPT][hapmap]
rs6856866	0.93[ASN][1000 genomes]
rs6858549	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73108238	0.87[ASN][1000 genomes]
rs7674446	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7676542	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30868800-30886800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
3	chr4:30878000-30885400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:30879800-30893000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:30881800-30886400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:30883200-30899000	Weak transcription	Aorta	Aorta
7	chr4:30884000-30885000	Enhancers	Fetal Heart	heart
8	chr4:30884600-30885200	Enhancers	Rectal Mucosa Donor 31	rectum

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