Variant report

Variant	rs6846615
Chromosome Location	chr4:30983652-30983653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11935770	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs11937701	0.87[ASN][1000 genomes]
rs11938996	0.90[JPT][hapmap]
rs11939049	0.81[ASN][1000 genomes]
rs12502649	0.87[ASN][1000 genomes]
rs12511624	0.87[ASN][1000 genomes]
rs12512723	0.87[ASN][1000 genomes]
rs12512727	0.87[ASN][1000 genomes]
rs13149475	1.00[JPT][hapmap]
rs13150083	1.00[JPT][hapmap]
rs13150968	1.00[JPT][hapmap]
rs1823196	0.90[JPT][hapmap]
rs28414371	0.94[ASN][1000 genomes]
rs35857516	1.00[JPT][hapmap]
rs4269140	0.90[JPT][hapmap]
rs4293757	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs56190579	0.88[ASN][1000 genomes]
rs59407249	0.87[ASN][1000 genomes]
rs61792864	0.88[ASN][1000 genomes]
rs61792874	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61792875	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792876	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792877	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792878	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792882	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792933	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792934	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61792936	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61795879	0.83[ASN][1000 genomes]
rs61795880	0.83[ASN][1000 genomes]
rs61795883	0.83[ASN][1000 genomes]
rs6448729	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842171	0.90[JPT][hapmap]
rs6842574	0.90[JPT][hapmap]
rs6847898	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73113461	0.84[ASN][1000 genomes]
rs73113466	0.84[ASN][1000 genomes]
rs73113475	0.87[ASN][1000 genomes]
rs73113481	0.87[ASN][1000 genomes]
rs73113482	0.87[ASN][1000 genomes]
rs7674446	0.90[JPT][hapmap]
rs7676542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9985629	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992704	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
2	chr4:30964600-30992600	Weak transcription	Aorta	Aorta
3	chr4:30982000-30998400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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