Variant report
| Variant | rs9985629 |
|---|---|
| Chromosome Location | chr4:30986860-30986861 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11935770 | 0.84[ASN][1000 genomes] |
| rs11937701 | 0.87[ASN][1000 genomes] |
| rs11939049 | 0.81[ASN][1000 genomes] |
| rs12502649 | 0.87[ASN][1000 genomes] |
| rs12511624 | 0.87[ASN][1000 genomes] |
| rs12512723 | 0.87[ASN][1000 genomes] |
| rs12512727 | 0.87[ASN][1000 genomes] |
| rs28414371 | 0.94[ASN][1000 genomes] |
| rs4293757 | 0.83[ASN][1000 genomes] |
| rs56190579 | 0.88[ASN][1000 genomes] |
| rs59407249 | 0.87[ASN][1000 genomes] |
| rs61792864 | 0.88[ASN][1000 genomes] |
| rs61792874 | 0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs61792875 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61792876 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61792877 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61792878 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61792882 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61792933 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61792934 | 0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs61792936 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61795879 | 0.83[ASN][1000 genomes] |
| rs61795880 | 0.83[ASN][1000 genomes] |
| rs61795883 | 0.83[ASN][1000 genomes] |
| rs6448729 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6846615 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6847898 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73113461 | 0.84[ASN][1000 genomes] |
| rs73113466 | 0.84[ASN][1000 genomes] |
| rs73113475 | 0.87[ASN][1000 genomes] |
| rs73113481 | 0.87[ASN][1000 genomes] |
| rs73113482 | 0.87[ASN][1000 genomes] |
| rs7676542 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9992704 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv878810 | chr4:30823157-30987395 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv998450 | chr4:30823631-31628179 | Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 3 | esv2481294 | chr4:30985561-30987035 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:30928600-30997400 | Weak transcription | Fetal Lung | lung |
| 2 | chr4:30964600-30992600 | Weak transcription | Aorta | Aorta |
| 3 | chr4:30982000-30998400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
