Variant report

Variant	rs28414371
Chromosome Location	chr4:30977047-30977048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10027212	0.81[EUR][1000 genomes]
rs11937701	0.81[ASN][1000 genomes]
rs12502649	0.81[ASN][1000 genomes]
rs12511624	0.81[ASN][1000 genomes]
rs12512723	0.81[ASN][1000 genomes]
rs12512727	0.81[ASN][1000 genomes]
rs4293757	0.89[ASN][1000 genomes]
rs4466009	0.81[EUR][1000 genomes]
rs56190579	0.94[ASN][1000 genomes]
rs59407249	0.81[ASN][1000 genomes]
rs61792864	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61792874	0.89[ASN][1000 genomes]
rs61792875	0.94[ASN][1000 genomes]
rs61792876	0.94[ASN][1000 genomes]
rs61792877	0.94[ASN][1000 genomes]
rs61792878	0.94[ASN][1000 genomes]
rs61792882	0.94[ASN][1000 genomes]
rs61792933	0.94[ASN][1000 genomes]
rs61792934	0.88[ASN][1000 genomes]
rs61792936	0.94[ASN][1000 genomes]
rs61795879	0.89[ASN][1000 genomes]
rs61795880	0.89[ASN][1000 genomes]
rs61795883	0.89[ASN][1000 genomes]
rs6448729	0.94[ASN][1000 genomes]
rs6822671	0.81[EUR][1000 genomes]
rs6846615	0.94[ASN][1000 genomes]
rs6847898	0.94[ASN][1000 genomes]
rs73113475	0.81[ASN][1000 genomes]
rs73113481	0.81[ASN][1000 genomes]
rs73113482	0.81[ASN][1000 genomes]
rs7672741	0.81[EUR][1000 genomes]
rs7676542	0.94[ASN][1000 genomes]
rs7697578	0.81[EUR][1000 genomes]
rs9985629	0.94[ASN][1000 genomes]
rs9992704	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
2	chr4:30964600-30992600	Weak transcription	Aorta	Aorta
3	chr4:30975000-30977200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:30975200-30977400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:30976000-30977600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:30976000-30977600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:30976200-30977600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:30976400-30977200	Enhancers	NHEK	skin
9	chr4:30976400-30977600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:30976400-30977600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr4:30976400-30977600	Enhancers	Hela-S3	cervix
12	chr4:30977000-30977600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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