Variant report

Variant	rs7697578
Chromosome Location	chr4:30974646-30974647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10008420	0.92[ASN][1000 genomes]
rs10027212	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28414371	0.81[EUR][1000 genomes]
rs4466009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61795886	0.87[ASN][1000 genomes]
rs61795889	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6822671	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844071	0.92[ASN][1000 genomes]
rs7672741	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
2	chr4:30964600-30992600	Weak transcription	Aorta	Aorta
3	chr4:30967800-30976000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:30971000-30975200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:30971200-30976000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:30972800-30976000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:30973200-30976000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:30973200-30976000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:30973200-30976200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:30973400-30975000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:30973400-30975400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr4:30973800-30974800	Enhancers	Hela-S3	cervix
13	chr4:30974200-30975600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:30974400-30976400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:30974600-30976000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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