Variant report

Variant	rs1823196
Chromosome Location	chr4:30854698-30854699
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10025293	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10027054	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11938996	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs11946238	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs12503052	0.83[ASN][1000 genomes]
rs12509289	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12513276	0.83[EUR][1000 genomes]
rs13135261	0.81[JPT][hapmap]
rs13137577	0.86[ASN][1000 genomes]
rs13145415	0.86[CEU][hapmap]
rs13149475	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs13150083	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13150968	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs13152756	0.86[ASN][1000 genomes]
rs1345147	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1374650	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs1374652	0.81[JPT][hapmap]
rs1374654	0.80[EUR][1000 genomes]
rs1447371	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16884163	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1823197	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1900571	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2121656	1.00[CEU][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes]
rs2121659	0.81[JPT][hapmap]
rs34211313	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34297806	0.86[ASN][1000 genomes]
rs34410526	0.86[ASN][1000 genomes]
rs35186637	0.81[ASN][1000 genomes]
rs35309740	0.86[ASN][1000 genomes]
rs35363488	0.86[ASN][1000 genomes]
rs35857516	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs36173628	0.86[ASN][1000 genomes]
rs4269140	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs4293757	0.90[JPT][hapmap]
rs4305479	0.86[ASN][1000 genomes]
rs55982008	0.86[ASN][1000 genomes]
rs56037166	0.86[ASN][1000 genomes]
rs56338231	0.86[ASN][1000 genomes]
rs60551461	0.86[ASN][1000 genomes]
rs6810526	0.81[JPT][hapmap]
rs6819990	0.81[JPT][hapmap]
rs6842171	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs6842574	0.81[JPT][hapmap]
rs6842641	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6842866	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6844742	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs6846615	0.90[JPT][hapmap]
rs73108238	0.86[ASN][1000 genomes]
rs7674446	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7676542	0.90[JPT][hapmap]
rs7682792	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs958274	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30842400-30855200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr4:30842600-30855800	Weak transcription	Aorta	Aorta
3	chr4:30846600-30855000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:30849200-30872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:30850800-30855800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:30851000-30855800	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:30851000-30857800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:30851600-30855600	Weak transcription	NHLF	lung
9	chr4:30852000-30858800	Weak transcription	Fetal Heart	heart
10	chr4:30854000-30855600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:30854000-30856200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:30854600-30854800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:30854600-30855000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:30854600-30855800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr4:30854600-30856000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr4:30854600-30856200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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