Variant report

Variant	rs6810526
Chromosome Location	chr4:30778020-30778021
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10517216	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11721555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11723028	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11941127	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11946238	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs12509289	0.81[JPT][hapmap]
rs13135261	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374650	0.95[CHD][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs1374651	0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1374652	0.87[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1374654	0.92[ASN][1000 genomes]
rs1550896	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16884042	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16884047	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1823196	0.81[JPT][hapmap]
rs1823197	0.91[JPT][hapmap]
rs2029202	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2121656	0.83[JPT][hapmap];0.88[YRI][hapmap];0.88[ASN][1000 genomes]
rs2121659	0.91[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2166718	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34343083	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6811850	0.87[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6819990	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6820160	0.83[CEU][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6820710	0.83[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6842641	0.90[JPT][hapmap]
rs6844742	0.87[ASN][1000 genomes]
rs6845219	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7664916	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7687637	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7700046	0.86[EUR][1000 genomes]
rs958274	0.83[CHD][hapmap];0.91[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6810526	PCDH7	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30770200-30779200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:30771000-30779000	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:30771200-30789400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:30773000-30778400	Weak transcription	HUVEC	blood vessel
5	chr4:30773200-30778400	Weak transcription	NH-A	brain
6	chr4:30773200-30778600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:30773200-30778600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:30775000-30778400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:30775600-30778400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:30776000-30778400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:30777800-30779200	Enhancers	Fetal Lung	lung
12	chr4:30778000-30778200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:30778000-30778200	Enhancers	Fetal Heart	heart
14	chr4:30778000-30778400	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:30778000-30778400	Enhancers	Fetal Stomach	stomach

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