Variant report

Variant	rs10517216
Chromosome Location	chr4:30786344-30786345
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:30785664..30787965-chr4:30791113..30792879,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11721555	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11723028	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11941127	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11946238	1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs12509289	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs13135261	0.91[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1374650	1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs1374651	0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374652	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374654	0.98[ASN][1000 genomes]
rs1447371	0.80[ASN][1000 genomes]
rs1550896	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16884042	0.91[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16884047	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16884163	0.80[ASN][1000 genomes]
rs1823197	0.91[JPT][hapmap]
rs1900571	0.80[ASN][1000 genomes]
rs2029202	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2121656	1.00[CHB][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap];0.94[ASN][1000 genomes]
rs2121659	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2166718	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34211313	0.80[ASN][1000 genomes]
rs34343083	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6810526	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6811850	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6819990	0.91[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6820160	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6820710	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6842641	0.90[JPT][hapmap]
rs6842866	0.80[ASN][1000 genomes]
rs6844742	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs6845219	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7664916	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7682792	0.80[ASN][1000 genomes]
rs7687637	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7700046	0.86[EUR][1000 genomes]
rs958274	0.91[JPT][hapmap];0.80[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30771200-30789400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:30779200-30787800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:30779200-30790600	Weak transcription	Fetal Lung	lung
4	chr4:30784600-30790600	Weak transcription	Aorta	Aorta
5	chr4:30785400-30790800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:30785600-30790200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:30785600-30790400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:30785600-30790800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:30785800-30787200	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:30785800-30787800	Weak transcription	Ovary	ovary
11	chr4:30785800-30789800	Weak transcription	Fetal Heart	heart
12	chr4:30785800-30790600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:30786000-30790600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:30786000-30790800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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