Variant report

Variant	rs7700046
Chromosome Location	chr4:30794277-30794278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10517216	0.86[EUR][1000 genomes]
rs11721555	0.86[EUR][1000 genomes]
rs11723028	0.82[EUR][1000 genomes]
rs11946238	0.89[YRI][hapmap]
rs13135261	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13138213	0.88[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs13143986	0.87[ASN][1000 genomes]
rs1348923	0.88[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.94[ASN][1000 genomes]
rs1374650	0.88[YRI][hapmap]
rs1374651	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1374652	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1550896	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121659	0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3756024	0.82[CHB][hapmap]
rs6810526	0.86[EUR][1000 genomes]
rs6811850	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6819990	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6820160	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6820710	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6844742	0.84[YRI][hapmap]
rs7687637	0.89[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30791200-30794800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:30791200-30804400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:30791400-30794800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:30791400-30795400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:30791400-30802400	Weak transcription	Aorta	Aorta
6	chr4:30791400-30802600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:30791600-30794400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:30791600-30794600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:30791600-30795200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:30791600-30795200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr4:30791600-30809800	Weak transcription	Fetal Lung	lung
12	chr4:30792000-30795200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:30792200-30794400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:30794000-30795000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:30794000-30796000	Enhancers	Fetal Heart	heart
16	chr4:30794000-30796200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr4:30794000-30796600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:30794200-30794400	Enhancers	Stomach Smooth Muscle	stomach
19	chr4:30794200-30794600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:30794200-30794600	Enhancers	HSMMtube	muscle
21	chr4:30794200-30794800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr4:30794200-30795600	Enhancers	Brain Anterior Caudate	brain
23	chr4:30794200-30796000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:30794200-30796000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr4:30794200-30796200	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links