Variant report

Variant	rs13143986
Chromosome Location	chr4:30738200-30738201
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10005883	0.83[EUR][1000 genomes]
rs11941127	0.83[EUR][1000 genomes]
rs13105058	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1348923	0.81[ASN][1000 genomes]
rs1550896	0.87[ASN][1000 genomes]
rs16884042	0.83[EUR][1000 genomes]
rs16884047	0.83[EUR][1000 genomes]
rs2029202	0.84[EUR][1000 genomes]
rs2166718	0.84[EUR][1000 genomes]
rs34343083	0.80[EUR][1000 genomes]
rs6820160	0.88[ASN][1000 genomes]
rs6820710	0.87[ASN][1000 genomes]
rs6845219	0.81[EUR][1000 genomes]
rs7664916	0.84[EUR][1000 genomes]
rs7700046	0.87[ASN][1000 genomes]
rs9918044	0.81[EUR][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30726200-30738600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:30726200-30757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:30726800-30740800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:30728200-30745600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:30728400-30746200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:30728600-30743000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:30729000-30748200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:30729200-30741600	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:30729200-30746200	Weak transcription	NH-A	brain
10	chr4:30729400-30740200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:30729400-30741600	Weak transcription	Brain Anterior Caudate	brain
12	chr4:30730200-30754800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:30732600-30746200	Weak transcription	NHEK	skin
14	chr4:30734600-30739000	Weak transcription	Fetal Heart	heart
15	chr4:30736400-30738200	Strong transcription	Fetal Lung	lung
16	chr4:30737200-30746000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:30737400-30746200	Weak transcription	Fetal Stomach	stomach
18	chr4:30737400-30748200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr4:30737400-30770800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:30737600-30739200	Weak transcription	Aorta	Aorta
21	chr4:30737600-30744600	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:30737600-30745600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:30737800-30744400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:30738000-30745200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:30738200-30738800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links