Variant report

Variant	rs13105058
Chromosome Location	chr4:30736301-30736302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10003328	0.88[ASN][1000 genomes]
rs10005883	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10939311	0.85[ASN][1000 genomes]
rs13143986	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1486767	0.87[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[ASN][1000 genomes]
rs6448718	0.85[ASN][1000 genomes]
rs7668393	0.94[ASN][1000 genomes]
rs9918044	0.88[CHB][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13105058	ZFP1	trans	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30726200-30738600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:30726200-30757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:30726800-30740800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:30727400-30736400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:30728200-30745600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:30728400-30746200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:30728600-30743000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:30729000-30748200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:30729200-30736400	Weak transcription	Fetal Stomach	stomach
10	chr4:30729200-30741600	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:30729200-30746200	Weak transcription	NH-A	brain
12	chr4:30729400-30736400	Weak transcription	Fetal Lung	lung
13	chr4:30729400-30736400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:30729400-30740200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:30729400-30741600	Weak transcription	Brain Anterior Caudate	brain
16	chr4:30730200-30754800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:30732000-30737600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:30732600-30746200	Weak transcription	NHEK	skin
19	chr4:30733200-30738000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:30734200-30736600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:30734600-30739000	Weak transcription	Fetal Heart	heart
22	chr4:30736000-30737600	Strong transcription	Fetal Muscle Leg	muscle
23	chr4:30736200-30737200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:30736200-30737600	Strong transcription	Aorta	Aorta

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