Variant report

Variant	rs6448718
Chromosome Location	chr4:30656471-30656472
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10003328	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10005883	0.81[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs10939311	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505073	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12646339	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13105058	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs1486767	0.88[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.90[ASN][1000 genomes]
rs4692477	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7668393	0.90[ASN][1000 genomes]
rs9918044	0.84[YRI][hapmap];0.84[ASN][1000 genomes]
rs9991348	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461315	chr4:30348053-30658535	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv593898	chr4:30348053-30658535	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878808	chr4:30630382-30663240	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv878809	chr4:30652196-30676425	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30654600-30657000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links